Cliff (Clifford_G_Andrew_PGP84)
Connected studies and activities

Genevieve Genome Report Keeping Pace Cross-Genome Error Check GoViral (2014-2016) Quantified Flu Personal Data Notebooks Fitbit Connection American Gut Project Harvard Personal Genome Project Runkeeper connection Wild Life of Our Homes Google Location History Upload Public Data Sharing
About me

I am Assistant Professor of Neurology (Part-Time) at the Johns Hopkins University School of Medicine in Baltimore with solo clinical neurology practicing evidence-based medicine in Severna Park, MD (www.Neurol.org) . I am Principal Investigator for GLEAMS Genomic Longitudinal Environmental Aging Memory Study (www.GLEAMS.org) gathering genomic, environmental and cognitive data on 15,000 individuals born between 1941-1970 in effort to identify genetic and environmental factors underlying development of Alzheimer's disease and late onset dementia. Avocations include molecular genomics PGP-84 in Harvard Personal Genome Project (www.personalgenomes.org) and genealogy with 1.7 x 10^4 ancestors (www.Geneal.net). I am a conservationist and former President of the Severn River Association and Scenic Rivers Land Trust (www.SRLT.org). I have run 5 marathons, 4 four-century bike tours, and now backpack 200 miles 2-weeks each September on the AT (2012 GA-NC, 2013 NC-TN, 2014 TN-VA, 2015 VA-WV) planning to cross the half-way point in PA on my 70th birthday this summer and finish atop ME's Katahdin in five years on my 75th birthday. My world-view is humanist naturalist. I serve as camp counselor teaching hominid evolution "Caveman" for the Unitarian Universalist Church of Annapolis Camp Beagle Vacation Darwin School, facilitator for the Naval Academy Freethinkers and Atheists, and leader of our local UU Humanist group promoting principles of integrity, science, reason, naturalism, wonder, compassion, and community.

Public data

American Gut Project

American-Gut-SAMEA3608319-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3608319-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3608319-metadata.json
(15.2 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3608319-metadata.tsv
(11.4 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3608319-run-ERR1073354.fastq.gz
(2.3 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3608532-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3608532-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3608532-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3608532-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3608532-run-ERR1073600.fastq.gz
(3.6 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3608533-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3608533-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3608533-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3608533-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3608533-run-ERR1073601.fastq.gz
(3.8 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3608534-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3608534-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3608534-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3608534-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3608534-run-ERR1073602.fastq.gz
(3.3 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3608535-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3608535-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3608535-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3608535-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3608535-run-ERR1073603.fastq.gz
(3.0 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3612283-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3612283-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3612283-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3612283-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3612283-run-ERR1076816.fastq.gz
(3.8 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3612284-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3612284-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3612284-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3612284-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3612284-run-ERR1076817.fastq.gz
(3.0 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3612285-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3612285-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3612285-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3612285-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3612285-run-ERR1076818.fastq.gz
(2.4 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3612286-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3612286-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3612286-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3612286-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3612286-run-ERR1076819.fastq.gz
(3.2 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3613086-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3613086-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3613086-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3613086-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3613086-run-ERR1077657.fastq.gz
(768.7 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4393965-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4393965-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4393965-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4393965-metadata.tsv
(13.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4393965-run-ERR1597026.fastq.gz
(1.7 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4393966-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4393966-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4393966-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4393966-metadata.tsv
(13.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4393966-run-ERR1597027.fastq.gz
(2.6 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4393967-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4393967-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4393967-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4393967-metadata.tsv
(13.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4393967-run-ERR1597028.fastq.gz
(893.0 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4393968-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4393968-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4393968-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4393968-metadata.tsv
(13.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4393968-run-ERR1597029.fastq.gz
(2.4 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4394160-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4394160-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4394160-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4394160-metadata.tsv
(13.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4394160-run-ERR1597221.fastq.gz
(1.2 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4394161-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4394161-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4394161-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4394161-metadata.tsv
(13.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4394161-run-ERR1597222.fastq.gz
(2.6 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4394162-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4394162-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4394162-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4394162-metadata.tsv
(13.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4394162-run-ERR1597223.fastq.gz
(1003.3 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4496052-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4496052-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4496052-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4496052-metadata.tsv
(13.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4496052-run-ERR1678462.fastq.gz
(1.3 MB) American Gut 16S FASTQ raw sequencing data.

Fitbit Connection

fitbit-data.json
(5.1 MB) Fitbit data.

Harvard Personal Genome Project

PGP-Harvard-hu7123C1-surveys.json
(27.9 KB) PGP Harvard survey data, JSON format.
PGP-Harvard-hu7123C1-var.tsv.bz2
(229.4 MB) PGP Harvard genome, Complete Genomics var file format.
PGP-Harvard-hu7123C1-var.vcf.bz2
(32.8 MB) PGP Harvard genome, VCF file. Derived from Complete Genomics var file.

Runkeeper connection

Runkeeper-activity-data-2014.json
(1.4 MB) Runkeeper GPS maps and imported activity data.
Runkeeper-activity-data-2015.json
(4.7 MB) Runkeeper GPS maps and imported activity data.
Runkeeper-activity-data-2016.json
(18.6 MB) Runkeeper GPS maps and imported activity data.
Runkeeper-activity-data-2017.json
(18.5 MB) Runkeeper GPS maps and imported activity data.
Runkeeper-activity-data-2018.json
(55.4 MB) Runkeeper GPS maps and imported activity data.
Runkeeper-activity-data-2019.json
(49.5 MB) Runkeeper GPS maps and imported activity data.

Wild Life of Our Homes

bacteria-kit-358-graphs.png
(504.6 KB) Visualization of Wild Life of Our Homes bacteria data
bacteria-kit-358.csv.bz2
(621.8 KB) Bacteria 16S-based OTU counts and taxonomic classifications
fungi-kit-358-graphs.png
(159.2 KB) Visualization of Wild Life of Our Homes fungi data
fungi-kit-358.csv.bz2
(322.4 KB) Fungi ITS-based OTU counts and taxonomic classifications
home-data-kit-358.json
(351 bytes) Geographical and architectural information about residence